FastQCFastQC Report
Thu 9 May 2024
EGAF00006138388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20119521
Total Bases160.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCCGC598344429.739495289177114No Hit
CCCGATTA583759329.014572464225168No Hit
TGGAGGCT452540422.492603079367544No Hit
ATTCTAAG354196717.60462885771485No Hit
CCCGATAA373880.18582947377325734No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)