FastQCFastQC Report
Wed 8 May 2024
EGAF00006138389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19713971
Total Bases157.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCCGC585622529.705963349545357No Hit
CCCGATTA571224128.97559806697494No Hit
TGGAGGCT443289722.486068382671355No Hit
ATTCTAAG346971317.60027444496089No Hit
CCCGATAA371670.18853127053905072No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)