FastQCFastQC Report
Wed 8 May 2024
EGAF00006138390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29796078
Total Bases238.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGTC1005444933.74420284441462No Hit
GAAACCCT951719731.941106477167903No Hit
AGCGAAAG943752531.673715580956664No Hit
CCGTGTGA2879940.9665500271545805No Hit
GAAACCCA563700.18918597273104198No Hit
AGCGACAG443110.1487142032585631No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)