FastQCFastQC Report
Wed 8 May 2024
EGAF00006138391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29986174
Total Bases239.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGCG810783527.038577845909916No Hit
GGACACGT799812726.672715899000654No Hit
TACTCTTC714211423.8180235998097No Hit
ATGAGAAA592894019.77224570230267No Hit
AGGAGAAA3309611.1037119974025362No Hit
CTGAGAAA450590.15026591921997118No Hit
TACTCTTA434930.14504351238674196No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)