FastQCFastQC Report
Wed 8 May 2024
EGAF00006138404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16638390
Total Bases133.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTCCTC427830425.71344943831705ABI Solid3 Adapter A (100% over 8bp)
TAACAAGG421626825.34060086342489No Hit
CCGGGTAT401511924.13165576717459No Hit
ATCATGCA397121223.867766051883628No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)