FastQCFastQC Report
Wed 8 May 2024
EGAF00006138405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11904506
Total Bases95.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCGGA348747529.29541973434261No Hit
GCTGAATT295782224.84623889475128No Hit
ATGCTCCG274540523.06189773855379No Hit
TGAAGTAC261974822.00635624863392No Hit
CACTCGAA126770.10648908908945907RNA PCR Primer, Index 47 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)