FastQCFastQC Report
Sat 11 May 2024
EGAF00006138407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23574400
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length91
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCC17369887.368111171440206No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTC10625664.507287566173476No Hit
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCC5964372.530019852042894No Hit
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTC3598601.5264863580833445No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGCTTC1999210.8480427921813493No Hit
GATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTC1575250.6682036446314646No Hit
TGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCT973700.41303278132211213No Hit
GATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTC530150.22488377222750103No Hit
GTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGCTTCA479290.2033095221935659No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGAATG377700.1602161666892901No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG372220.15789161123931045No Hit
CTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGCTTCACA338420.14355402470476447No Hit
GTTTGATGTTCCCTCCACAGTGCACTCCAGAGAGAGCGGGCTGCCCACAG334360.14183181756481608No Hit
TGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCT329060.13958361612596715No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATCTGGGGTG314990.13361527758924938No Hit
CTGAGATCTGACCCCAAAGAAAGTGCCCAGGAGAAGGGCAAGGAGAGAGC307860.13059081037057146No Hit
CAGGCAGTATCTGGAGTCATTGAGGGCGGGCTGCTCCTTGAGGGGCTGCG290170.12308690783222478No Hit
GTCTGAGATCTGACCCCAAAGAAAGTGCCCAGGAGAAGGGCAAGGAGAGA282230.11971884756345867No Hit
GCTGGCCATTGATGAATAGTCTGAGATCTGACCCCAAAGAAAGTGCCCAG272780.11571026197909598No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTTA269370.11426377765711959No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGCTCTT254410.10791791095425547No Hit
GGCTGCACCAGGGTCGCTGGCCATTGATGAATAGTCTGAGATCTGACCCC245860.10429109542554635No Hit
GAGCAGAGCATCATCCAAGCCAGCCTTTCCTTCAGCTAGTCTGGGGGACA240600.10205986154472649No Hit
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGATTC236870.10047763675851772No Hit
GATGAATAGTCTGAGATCTGACCCCAAAGAAAGTGCCCAGGAGAAGGGCA236080.10014252748744401No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)