FastQCFastQC Report
Wed 8 May 2024
EGAF00006138423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12348292
Total Bases98.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC346540428.063832633695412No Hit
GGCAATGG305287724.723071012574046No Hit
TTTGGGTA288558323.368276357572366No Hit
ACATTACT284530523.042093594806474No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)