FastQCFastQC Report
Wed 8 May 2024
EGAF00006138427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25060930
Total Bases200.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAGCAT794440831.700371853718117No Hit
AGGCCGTG624742324.928935199132674No Hit
TTTGTACA563960322.50356630819367No Hit
CCATATGC501307820.003559325212592No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)