FastQCFastQC Report
Wed 8 May 2024
EGAF00006138429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28440857
Total Bases227.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGCTC811193028.522101144842438No Hit
GTCCTTCT680207723.916568336882392No Hit
TCTTAAAG652995822.95977930622836No Hit
AAGACGGA651614022.911194272380754No Hit
GTCCTTCA571620.20098550476168844No Hit
AAGACGAA422660.14861014912454995No Hit
AATACGGA321670.11310137384397384No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)