FastQCFastQC Report
Wed 8 May 2024
EGAF00006138430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28911808
Total Bases231.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGCTC823837028.4948281338891No Hit
GTCCTTCT692083123.937731600873942No Hit
AAGACGGA665224123.00873400930167No Hit
TCTTAAAG664230622.974370886801683No Hit
GTCCTTCA576700.19946867383734704No Hit
AAGACGAA433450.14992144386127634No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)