FastQCFastQC Report
Thu 9 May 2024
EGAF00006138431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30739166
Total Bases245.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC886730528.846927727317002No Hit
AAGATCAT731471623.796078267055133No Hit
CCTGAAGG730141023.752791471310573No Hit
TGATCTCA685060722.28624875508984No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)