FastQCFastQC Report
Wed 8 May 2024
EGAF00006138432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28803793
Total Bases230.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGTGCGG809925528.118709921294045No Hit
CTCGAAAT765856826.588748224929958No Hit
GGTATGCA660528422.931993713466834No Hit
ACACCTTC610173621.183793398320837No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)