FastQCFastQC Report
Wed 8 May 2024
EGAF00006138433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26552176
Total Bases212.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGATAGC699410426.340982373723342No Hit
GGCTGTTG671192025.278229550753206No Hit
TATGAGCT631542723.784969638646565No Hit
ATACCCAA609441922.952616011584134No Hit
GATGAGCT501110.1887265284773647No Hit
GGCGGTTG338490.12748107725709562No Hit
ATACCAAA317210.11946666819322078No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)