FastQCFastQC Report
Thu 9 May 2024
EGAF00006138434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26097553
Total Bases208.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGATAGC686718426.313516826654208No Hit
GGCTGTTG658853025.245776874176673No Hit
TATGAGCT618751423.70917304009307No Hit
ATACCCAA598659022.939277103872534No Hit
GATGAGCT581290.22273735778982803No Hit
GGCGGTTG358350.13731172420648022No Hit
ATACCAAA317500.12165891568454712No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)