FastQCFastQC Report
Wed 8 May 2024
EGAF00006138435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33466363
Total Bases267.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT1038033131.017206739794222No Hit
TGTGCGGG1023465330.58190996135433No Hit
ACCATAAC810032424.20437500184887No Hit
GTGTATTA424581412.686810335500157No Hit
TGTGCGGA809130.24177410613755668No Hit
GGGTATTA353790.1057151026539693No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)