FastQCFastQC Report
Wed 8 May 2024
EGAF00006138436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32971461
Total Bases263.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT1022152331.00112245556847No Hit
TGTGCGGG1007288830.55032350553104No Hit
ACCATAAC797041024.17366339938652No Hit
GTGTATTA418178812.683053383652002No Hit
TGTGCGGA792040.24021986772136059No Hit
GGGTATTA388780.11791409546577265No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)