FastQCFastQC Report
Wed 8 May 2024
EGAF00006138437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28365750
Total Bases226.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGACCT774312127.29743088055137No Hit
GAGATGAC745876126.294954302283564No Hit
ACTTCATA661852823.332815102720712No Hit
TGCCGTGG613605621.631918775283573No Hit
CTAGACCA331800.1169720525633907No Hit
TGCCGTGA284320.10023355631351188No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)