FastQCFastQC Report
Wed 8 May 2024
EGAF00006138439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24054820
Total Bases192.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGGCTC775682332.24643959090112No Hit
CGTCCTAG689595228.667651639047808No Hit
GAGTTAGT514291221.379964597531803No Hit
TTAAAGCA404213816.803858852404634No Hit
ACCGGCTA275450.11450927506420751No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)