FastQCFastQC Report
Wed 8 May 2024
EGAF00006138444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24111687
Total Bases192.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATCA713207329.57931977136233No Hit
AGTTCGGC613542625.445859512028335No Hit
TCCGGAAG591481224.53089242573529No Hit
GTAATCTT469019119.451940463560263No Hit
GTAATCTA268430.11132775570618515No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)