FastQCFastQC Report
Thu 9 May 2024
EGAF00006138445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23574400
Total Bases188.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATCA698243929.618734729197776No Hit
AGTTCGGC599708625.43897617754853No Hit
TCCGGAAG576764724.465721290891814No Hit
GTAATCTT457309519.398563696212843No Hit
GTAATCTA265450.11260095697027284No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)