FastQCFastQC Report
Thu 9 May 2024
EGAF00006138446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29543248
Total Bases236.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGCG797789827.00413305943883No Hit
GGACACGT788354626.68476397720386No Hit
TACTCTTC702431523.776380308624155No Hit
ATGAGAAA579888819.628471453104954No Hit
AGGAGAAA3525651.1933860488190058No Hit
CTGAGAAA503110.17029610285233363No Hit
TACTCTTA442680.1498413444588083No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)