FastQCFastQC Report
Wed 8 May 2024
EGAF00006138461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24819610
Total Bases645.3 Mbp
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA336360.13552187161683846No Hit
CGTTCGTTATCGGAATTAACCAGACA316220.12740732026006854No Hit
TGACTTTTACTTCCTCTAGATAGTCA260850.10509834763721106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)