FastQCFastQC Report
Wed 8 May 2024
EGAF00006138467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31233896
Total Bases249.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC900901428.843708770753413No Hit
AAGATCAT745116523.85602167593822No Hit
CCTGAAGG742526623.773102145182275No Hit
TGATCTCA696760422.307828648721888No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)