FastQCFastQC Report
Thu 12 May 2022
EGAF00006138592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006138592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123610197
Sequences flagged as poor quality0
Sequence length150
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCACGGGCCGGGGGCGGGACGGGCGCCGCACGCCCCGACCCGTCTCC3990390.32282045469112874No Hit
GCCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCG1926700.15586901782868287No Hit
GGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGAG1760790.1424469859877337No Hit
CCGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGG1688780.13662141481741996No Hit
GGGGGAAGAAGAGGATCGGCGGGCGGCGGGCGGGGAAGAGGGCACAGACG1658950.13420818348829264No Hit
GGGAGGGGCACGGGCCGGGGGCGGGACGGGCGCCGCACGCCCCGACCCGT1455180.11772329753669108No Hit
GGGGGGAAGAAGAGGATCGGCGGGCGGCGGGCGGGGAAGAGGGCACAGAC1390400.11248262956817388No Hit
GGGCGGGCTCCCGGCCCCGGCCGACGCGCCGCGAGGCGAGCCGGGCGGGC1306480.10569354565465178No Hit
CGGGGAGAGCGAGCGGGGCCGTGCCCGGCGGCGCGGAGCGGCGCGGCGGA1294140.1046952461373393No Hit
CTCGGGACGGGGCCCCGGCGCGGCGCGGCGCGGCCGCGAGCCGGAGGCGG1253000.10136704174979999No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)