FastQCFastQC Report
Wed 8 Feb 2023
EGAF00006139136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006139136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58453
Sequences flagged as poor quality0
Sequence length35-251
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2280.3900569688467658No Hit
CTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGC680.11633278018236873No Hit
CATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGC650.11120045164491131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)