FastQCFastQC Report
Wed 8 Feb 2023
EGAF00006139185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006139185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45482
Sequences flagged as poor quality0
Sequence length35-251
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2170.4771118244580273No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA620.13631766413086496No Hit
GTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCT490.10773492810342554No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA470.10333758409920407No Hit
ACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTT470.10333758409920407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)