FastQCFastQC Report
Sat 17 Dec 2022
EGAF00006141619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006141619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16799700
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCACACGTCTGAACTCCAGTCACCTAGTCATCTCGTATGCCGT430910.2564986279516896TruSeq Adapter, Index 12 (97% over 35bp)
GGAAGAGCACACGTCTGAACTCCAGTCACCTAGTCATCTCGTATGCCGTC312450.18598546402614333TruSeq Adapter, Index 12 (97% over 34bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)