FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006141627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006141627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49202089
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA966640.19646320301562806No Hit
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT950490.19318082205818538No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC696460.14155090040993992No Hit
CCTACGGGGGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGAT626090.12724866214521907No Hit
GCGAACCGGGTGAACTGAAACATCTCAGTAGCTCGAGGAAAAGACATCAA502700.10217045865674523No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)