FastQCFastQC Report
Sat 17 Dec 2022
EGAF00006141658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006141658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23618570
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2154270.9121085654211918No Hit
CGAGGAGTGCGGTTCTTTGTAAAGTGCCTTCGAAGAGTCGAGTTGTTTGG640430.27115528162797325No Hit
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT543390.23006896691882703No Hit
GGGCCGTTCCTTGTCTATGTTCCTTGGAACAGGACGTCATAGAGGGTGAG527140.22318878746681106No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC382230.16183452258117234No Hit
TGGGGCCGTTCCTTGTCTATGTTCCTTGGAACAGGACGTCATAGAGGGTG364390.15428114403200532No Hit
AGAGGGCAACTTTGGGGCCGTTCCTTGTCTATGTTCCTTGGAACAGGACG333620.14125325961732654No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA327610.13870865170922708No Hit
TTTGGGGCCGTTCCTTGTCTATGTTCCTTGGAACAGGACGTCATAGAGGG326310.13815823735306584No Hit
TGAGAATCCCGTGTGGCGAGGAGTGCGGTTCTTTGTAAAGTGCCTTCGAA317210.1343053368599369No Hit
TCCCGTGTGGCGAGGAGTGCGGTTCTTTGTAAAGTGCCTTCGAAGAGTCG278690.11799613609121974No Hit
GGGGCAACTTTGGGGCCGTTCCTTGTCTATGTTCCTTGGAACAGGACGTC274270.1161247272802714No Hit
AGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAAC261940.11090425880991102No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA258350.10938426839558872No Hit
CATAGAGGGTGAGAATCCCGTGTGGCGAGGAGTGCGGTTCTTTGTAAAGT249480.1056287489039345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)