FastQCFastQC Report
Thu 5 Jan 2023
EGAF00006141676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006141676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21232173
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC375090.1766611453288366No Hit
CGGAAGAGCACACGTCTGAACTCCAGTCACTGACACATCTCGTATGCCGT308590.14534075245148012TruSeq Adapter, Index 4 (97% over 34bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)