FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006141803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006141803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences200181500
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40833772.0398373476070466No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAATAGTCATCTCGTAT5537720.2766349537794452TruSeq Adapter, Index 2 (97% over 37bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4864540.2430064716269985No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3638650.18176754595204853No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3350110.16735362658387515No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3164490.1580810414548797No Hit
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2159450.10787460379705416No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)