FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006141816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006141816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences158386797
Sequences flagged as poor quality0
Sequence length151
%GC27

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36948492.3328011361957146No Hit
CCCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28492321.798907518787693No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16026811.0118779029289922No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15219550.9609102708226368No Hit
CCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13401620.8461323957450821No Hit
CCCCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12863900.8121825962551664No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11849340.7481267520044615No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11158630.704517687796919No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9857900.6223940496757442No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9644640.6089295435401727No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9577540.6046930793101397No Hit
CCCCCTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8565210.5407780296232646No Hit
CCCCTCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8411070.5310461578435733No Hit
CCCCCCCCCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8085500.5104907828901926No Hit
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6092200.38464064653065744No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5676730.3584092934210924No Hit
GGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAACTATGCCTGG5406280.3413340065207581No Hit
CCCCTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4924510.3109166984417268No Hit
CCCCCCCCCCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4744320.2995401188648319No Hit
CCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4411380.27851942734848034No Hit
CCCCCCCCCGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4142960.2615723076968341No Hit
TCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3992560.25207656671029216No Hit
CCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3804720.24021699232922802No Hit
CCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3530180.2228834768342465No Hit
CCCCCCCCCCGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3503280.22118510294769078No Hit
CCCCCCCCCCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3443570.21741521801214278No Hit
CCCCCCCCCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3133280.19782456993558623No Hit
CCCTCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2926620.18477676519969022No Hit
CCCCCCCCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2826530.1784574253370374No Hit
CCCCCCCCCCGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2762120.17439079849565997No Hit
CCCCCCCCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2759580.17423043159336066No Hit
CCCCCCCCCGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2615440.1651299255707532No Hit
CCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2545560.16071794166025088No Hit
CCCCCCCCCCTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2271620.14342230811069434No Hit
GTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTC2129780.13446701621221624No Hit
CCCCCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1988990.1255780177182319No Hit
TGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAACTATGCCTG1715030.1082811214371612No Hit
CCCCCCTCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1700140.10734101782486327No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)