FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006141965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006141965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences228543328
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA42181781.8456797828725064No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6852420.2998302361292297No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4900040.21440310871818583No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4833170.21147718650530895No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4587550.2007299902450007No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTATGTTATCTCGTAT3980390.1741634741575129TruSeq Adapter, Index 1 (97% over 37bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3012120.1317964530559387No Hit
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2962010.12960387099990073No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)