FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences201773908
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA131041336.494463595362389No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15694810.7778414045486991No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12323880.6107766917018825No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9955990.49342306439343986No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9016970.4468848370622826No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGTAATCATCTCGTAT8580290.4252427920462342TruSeq Adapter, Index 15 (97% over 37bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7399470.3667208547103127No Hit
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5863780.2906114104703766No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3342680.16566463092938655No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGTAATCATCGCGTAT3339980.16553081779037557TruSeq Adapter, Index 15 (97% over 37bp)
CCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3153910.1563091100956423No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3014770.14941327299860793No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2595330.12862564965535583No Hit
AAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2052490.10172227025508174No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)