FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences201773908
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22922211.1360343974702616No Hit
CCCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15961470.791057186640802No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9179700.4549498045108984No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9053580.44869924410642825No Hit
CCCCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8022000.397573704128286No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7469000.37016679084195564No Hit
CCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7104940.3521238236610851No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6749460.3345060848997384No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5941230.2944498651431185No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5641170.27957876496102757No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5451470.27017715293495725No Hit
CCCCCTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5410730.26815806134854664No Hit
CCCCTCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5327980.26405693643996825No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4753200.2355705971656157No Hit
CCCCCCCCCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4423180.219214666744721No Hit
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3499690.17344611276498645No Hit
CCCCTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3062360.15177185347473174No Hit
CCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2954310.14641684989319828No Hit
CCCCCCCCCCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2780480.1378017617619816No Hit
TCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2578820.1278074070905144No Hit
CCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2209320.10949483121474755No Hit
CCCCCCCCCGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2175210.10780432522524172No Hit
CCCCCCCCCCGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2040730.10113943969405598No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)