FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199796758
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30239441.5135100440418559No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4004310.20041916796267537No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3000620.15018361809454386No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCATCTAATCTCGTAT2829420.1416149104881872TruSeq Adapter, Index 1 (97% over 37bp)
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2823640.14132561650474829No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2363070.11827369090743704No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)