FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165607995
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT32325011.9518991217785109No Hit
CCCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18491511.1165831697920139No Hit
CCCCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11485510.6935359612318234No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11305510.6826669207606795No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10424600.6294744405304828No Hit
CCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8981380.5423276817040144No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8252280.49830202944006413No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7741150.4674381813510876No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7569510.4570739474262701No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7188030.43403882765442575No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7001550.4227785017263206No Hit
CCCCCTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6789290.40996148766851503No Hit
CCCCTCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6776180.4091698592208667No Hit
CCCCCCCCCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5560280.33574949083828953No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4860810.29351300340300596No Hit
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4787700.28909836146497636No Hit
CCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4276090.2582055292680767No Hit
CCCCCCCCCCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3710490.22405258876541556No Hit
TCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3282970.1982374099752853No Hit
CCCCTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3274080.19770060014312718No Hit
CCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3068380.18527970222693657No Hit
CCCCCCCCCCGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2808660.16959688449823934No Hit
CCCCCCCCCGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2752480.166204536200079No Hit
CCCCCCCCCCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2748320.1659533405980792No Hit
CCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2609610.15757753724389936No Hit
CCCCCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2128240.12851070384615187No Hit
CCCCCCCCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2122910.12818885948108966No Hit
CCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2099150.12675414613889868No Hit
CCCCCCCCCCGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2060620.12442756764249215No Hit
CCCTCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1954920.11804502554360373No Hit
CCCCCCCCCGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1940830.11719422120894586No Hit
CCCCCCCCCCTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1690130.10205606317496929No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)