FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences210798264
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40339271.9136433685241354No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCTGCTGATCTCGTAT6292860.29852522884154303TruSeq Adapter, Index 11 (97% over 37bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5196690.24652432621551382No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3731590.1770218563090254No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3599260.17074429037992458No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3277020.15545763697560622No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2145600.10178451943987546No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)