FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences201323202
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA23198171.1522849711082976No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4184460.20784787637144775No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCGCTAGAATCTCGGTT3170830.1574994818530653TruSeq Adapter, Index 10 (97% over 38bp)
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3136830.155810655147438No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3057470.1518687349310091No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2695360.13388223380234138No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)