FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199549811
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA16443440.8240268390933229No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3943630.19762634603547685No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGACAGTAAATCTCGTAT3851070.1929879051601808TruSeq Adapter, Index 6 (97% over 37bp)
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2831270.1418828705380232No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2794900.1400602679598629No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2567860.12868265758467695No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)