FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences232936379
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA56039552.4057878052616246No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7029880.301793993286038No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAACGCATTATCTCGTAT5207590.2235627608858812TruSeq Adapter, Index 1 (97% over 36bp)
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5162710.2216360545383081No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4951530.21257005974150567No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4624310.19852244719576412No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3111490.13357681669809077No Hit
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2923370.1255007917848676No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)