FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153050463
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16492421.0775805362967115No Hit
CCCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11642760.7607138045704572No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8429360.5507569095037629No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7864640.5138592752901375No Hit
CCCCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6688280.43699835132155074No Hit
CCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5632520.368017181365861No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5578240.364470638680786No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5024750.3283067493889254No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4817980.31479682619450816No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4741560.3098037018025878No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4611530.3013078111367752No Hit
CCCCCTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4556290.29769854404164725No Hit
CCCCTCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4556130.2976880899733051No Hit
CCCCCCCCCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3672890.2399790192075407No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3220050.21039139228216513No Hit
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3152140.205954293650193No Hit
CCCCCCCCCCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2823110.18445615548382888No Hit
CCCCTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2296560.15005246994907817No Hit
CCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2138900.13975129235643016No Hit
CCCCCCCCCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2103810.13745858449314197No Hit
CCCCCCCCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2001480.1307725544090644No Hit
TCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1989420.12998457900777471No Hit
CCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1776180.1160519194247717No Hit
CCCCCCCCCGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1737200.11350504702491492No Hit
CCCCCCCCCCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1705770.11145147597495343No Hit
CCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1556530.1017004437288112No Hit
CCCCCCCCCCGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1542100.10075761744020337No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)