FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences195233558
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA22454161.1501178501290235No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCAATTCATCTCGTAT3586470.1837015130359915TruSeq Adapter, Index 1 (97% over 37bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3573410.1830325706608287No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2378560.12183151423179No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2345110.12011818173185164No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2280120.11678934827382492No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)