FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142083

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142083
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences196708637
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18361600.9334414736451049No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAACCTAGATCTCGTAT3551010.1805213057319898TruSeq Adapter, Index 9 (97% over 37bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3404330.17306459197315266No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2380530.12101807202293817No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2338970.11890530256686187No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2297610.11680270043251838No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)