FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences190395943
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA51595312.7098954519214726No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5909840.3103973701792585No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCTTGGTATCTCGTAT4339300.22790926800367797TruSeq Adapter, Index 6 (97% over 36bp)
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4071510.21384436747163252No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3961580.20807060999193666No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3724650.19562654231555765No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2578360.1354209527458261No Hit
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2375840.12478417147785549No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)