FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences217962101
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14079930.6459806514711472No Hit
CCCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6453750.29609505369926675No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5302050.24325559240227732No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5226010.2397669125055828No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5149110.23623877620816292No Hit
CCCCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4759330.21835585077242398No Hit
CCCCCTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3222400.14784221592725424No Hit
CCCCTCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3221600.1478055122986725No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3218350.14765640380755918No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3185250.14613779117498962No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3111310.1427454583033222No Hit
CCCCCCCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2570090.1179145359770596No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2279030.10456083830830756No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)