FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences229624283
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA82380943.587640598098242No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7974860.34730037676372405No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6015200.261958357426858No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5646070.2458829670031022No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5456720.23763688790701637No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTGAGCCTATCTCGTAT5076320.22107069573299443TruSeq Adapter, Index 19 (97% over 37bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3547350.15448496795088523No Hit
CCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3523290.15343716936069865No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)