FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences217368312
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA26295301.2097117449207593No Hit
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3951830.18180340840112885No Hit
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2830440.13021401205894262No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCTCGACATCTCGTAT2781190.12794827242344323TruSeq Adapter, Index 11 (97% over 37bp)
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2776250.12772100838690784No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2579680.11867783193715926No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)