FastQCFastQC Report
Fri 16 Dec 2022
EGAF00006142115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006142115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences197623148
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA26465421.3391862374340884No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAATCAGATCTCGTAT6822640.34523486084737404TruSeq Adapter, Index 3 (97% over 36bp)
CCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3949370.19984349201845525No Hit
CCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2744000.1388501310585337No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAATCAGATCGCGTAT2701300.13668945299869426TruSeq Adapter, Index 3 (97% over 36bp)
CCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2675990.13540873258430233No Hit
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2406840.1217893766169538No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)